Scientific publications

2020
Liquid phase electron microscopy of biological specimens

Peckys, Diana B. | Macías-Sánchez, Elena | de Jonge, Niels

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Liquid phase electron microscopy is a new analytical method that has opened up a rapidly emerging field of research during the past decade. This article discusses this new microscopy modality within the context of imaging eukaryotic cells, bacteria, proteins, viruses, and biomineralization processes. The obtained resolution is typically not a function of the instrument, rather it is limited by the available electron dose within the limit of radiation damage. Therefore, different types of samples are best imaged with different electron microscopy (EM) modalities. The obtained information differs from that acquired with conventional EM as well as cryo-electron microscopy. This article gives an overview of achievements thus far in this area and the unique information that has been obtained. A discussion on potential future developments in the field, and technological advancements required to reach those goals conclude the article.

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MRS Bulletin,
2020, 45 (9), 754-760.

Determining the Efficiency of Single Molecule Quantum Dot Labeling of HER2 in Breast Cancer Cells

Peckys, Diana B. | Quint, Cedric | Jonge, Niels de

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Quantum dots exhibit unique properties compared to other fluorophores, such as bright fluorescence and lack of photobleaching, resulting in their widespread utilization as fluorescent protein labels in the life sciences. However, their application is restricted to relative quantifications due to lacking knowledge about the labeling efficiency. We here present a strategy for determining the labeling efficiency of quantum dot labeling of HER2 in overexpressing breast cancer cells. Correlative light- and liquid-phase electron microscopy of whole cells was used to convert fluorescence intensities into the underlying molecular densities of the quantum dots. The labeling procedure with small affinity proteins was optimized yielding a maximal labeling efficiency of 83%, which was applicable to the high amount of ∼1.5 × 106 HER2 per cell. With the labeling efficiency known, it is now possible to derive the absolute protein expression levels in the plasma membrane and its variation within a cell and between cells.

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Nano Letters,
2020, 20 (11), 7948–7955.

EGFR Expression in HER2-Driven Breast Cancer Cells

Weinberg, Florian | Peckys, Diana B. | de Jonge, Niels

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The epidermal growth factor receptor HER2 is overexpressed in 20% of breast cancer cases. HER2 is an orphan receptor that is activated ligand-independently by homodimerization. In addition, HER2 is able to heterodimerize with EGFR, HER3, and HER4. Heterodimerization has been proposed as a mechanism of resistance to therapy for HER2 overexpressing breast cancer. Here, a method is presented for the simultaneous detection of individual EGFR and HER2 receptors in the plasma membrane of breast cancer cells via specific labeling with quantum dot nanoparticles (QDs). Correlative fluorescence microscopy and liquid phase electron microscopy were used to analyze the plasma membrane expression levels of both receptors in individual intact cells. Fluorescent single-cell analysis of SKBR3 breast cancer cells dual-labeled for EGFR and HER2 revealed a heterogeneous expression for receptors within both the cell population as well as within individual cells. Subsequent electron microscopy of individual cells allowed the determination of individual receptors label distributions. QD-labeled EGFR was observed with a surface density of (0.5–5) × 101 QDs/µm2, whereas labeled HER2 expression was higher ranging from (2–10) × 102 QDs/µm2. Although most SKBR3 cells expressed low levels of EGFR, an enrichment was observed at large plasma membrane protrusions, and amongst a newly discovered cellular subpopulation termed EGFR-enriched cells.

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International Journal of Molecular Sciences,
2020, 21 (23), 9008.

OPEN ACCESS
Electron microscopy of nanoparticle superlattice formation at a solid-liquid interface in nonpolar liquids

Cepeda-Perez, E. | Doblas, David | Kraus, Tobias | de Jonge, Niels

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Nanoparticle superlattice films form at the solid-liquid interface and are important for mesoscale materials, but are notoriously difficult to analyze before they are fully dried. Here, the early stages of nanoparticle assembly were studied at solid-liquid interfaces using liquid-phase electron microscopy. Oleylamine-stabilized gold nanoparticles spontaneously formed thin layers on a silicon nitride (SiN) membrane window of the liquid enclosure. Dense packings of hexagonal symmetry were obtained for the first monolayer independent of the nonpolar solvent type. The second layer, however, exhibited geometries ranging from dense packing in a hexagonal honeycomb structure to quasi-crystalline particle arrangements depending on the dielectric constant of the liquid. The complex structures formed by the weaker interactions in the second particle layer were preserved, while the surface remained immersed in liquid. Fine-tuning the properties of the involved materials can thus be used to control the three-dimensional geometry of a superlattice including quasi-crystals.

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Science Advances,
2020, 6 (20), eaba1404.

OPEN ACCESS
Role of Hair Coverage and Sweating for Textile Friction on the Forearm

Lyu, Jingchun | Özgün, Novaf | Kondziela, David J. | Bennewitz, Roland

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Friction of textiles on the human forearm is an important factor in comfort sensations of garments. We built an experiment to measure friction for textiles sliding on the forearm under loading conditions which are characteristic for wearing shirts or jackets. The hair coverage of the participants’ forearm was quantified by image analysis of photographs of the arm in the region of contact. Friction results for five standard textiles suggest to treat hair coverage in two classes. Sweating after physical activity leads to an increase of friction by factors of 2 to 5 for participants with less hairy forearms, while an increase by a factor of 1 to 1.7 only was found for participants with more hairy forearms. We introduce a method of wetting the forearm of study participants in a controlled way with water, which results in similar friction as for the sweating forearm after physical activity. The method allows for efficient studies of the role of skin moisture for friction including varying hair coverage of the skin.

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Tribology Letters,
2020, 68 (4), 100_1-9.

OPEN ACCESS
Safe-by-Design part I: Proposal for nanospecific human health safety aspects needed along the innovation process

Dekkers, Susan | Wijnhoven, Susan W. P. | Braakhuis, Hedwig M. | Soeteman-Hernandez, Lya G. | Sips, Adrienne J. A. M. | Tavernaro, Isabella | Kraegeloh, Annette | Noorlander, Cornelle W.

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Safe-by-Design aims to reduce uncertainties and/or increase the human health and environmental safety from already early in the innovation process onwards and will thereby contribute to increased innovation efficiency, economic viability, interdisciplinary collaboration, consumers trust and improve sustainability. Since most innovators or designers are neither toxicologists nor risk assessors, considering human health safety aspects within their innovation process may be challenging. This paper provides sets of questions that can help innovators to assess nanospecific human health safety aspects of their product or material along the various stages of the innovation process. Addressing these questions will facilitate innovators to identify which type of information may support decisions on how to address potential human health risks in the innovation process. The identified information on the human health safety aspects can help innovators to decide if further investments in the product or material are beneficial. It may allow them to rank, prioritize and choose safer alternatives early in the innovation process. This may enable innovators to better anticipate on potential safety issues in an early stage, preventing these safety issues to become an innovation killer in a later stage of the innovation process. This approach to identify potential nanospecific human health risks should be considered as complementary to current regulations. The applicability of this approach was evaluated using a few industrial case studies. To determine if the approach is applicable to the innovation of a broader group of nanomaterials and nano-enabled products, more experience within various industrial sectors is needed.

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NanoImpact,
2020, 18, 100227.

OPEN ACCESS
Integrating Biophysics in Toxicology

Del Favero, Giorgia | Kraegeloh, Annette

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Integration of biophysical stimulation in test systems is established in diverse branches of biomedical sciences including toxicology. This is largely motivated by the need to create novel experimental setups capable of reproducing more closely in vivo physiological conditions. Indeed, we face the need to increase predictive power and experimental output, albeit reducing the use of animals in toxicity testing. In vivo, mechanical stimulation is essential for cellular homeostasis. In vitro, diverse strategies can be used to model this crucial component. The compliance of the extracellular matrix can be tuned by modifying the stiffness or through the deformation of substrates hosting the cells via static or dynamic strain. Moreover, cells can be cultivated under shear stress deriving from the movement of the extracellular fluids. In turn, introduction of physical cues in the cell culture environment modulates differentiation, functional properties, and metabolic competence, thus influencing cellular capability to cope with toxic insults. This review summarizes the state of the art of integration of biophysical stimuli in model systems for toxicity testing, discusses future challenges, and provides perspectives for the further advancement of in vitro cytotoxicity studies.

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Cells,
2020, 9 (5), 1282.

OPEN ACCESS
High-dose intranasal application of titanium dioxide nanoparticles induces the systemic uptakes and allergic airway inflammation in asthmatic mice

Harfoush, Shaza A. | Hannig, Matthias | Le, Duc Dung | Heck, Sebastian | Leitner, Maximilian | Omlor, Albert Joachim | Tavernaro, Isabella | Kraegeloh, Annette | Kautenburger, Ralf | Kickelbick, Guido | Beilhack, Andreas | Bischoff, Markus | Nguyen, Juliane | Sester, Martina | Bals, Robert | Dinh, Quoc Thai

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Titanium dioxide nanoparticles (TiO2 NPs) have a wide range of applications in several industrial and biomedical domains. Based on the evidence, the workers exposed to inhaled nanosized TiO2 powder are more susceptible to the risks of developing respiratory diseases. Accordingly, this issue has increasingly attracted the researchers’ interest in understanding the consequences of TiO2 NPs exposure. Regarding this, the present study was conducted to analyze the local effects of TiO2 NPs on allergic airway inflammation and their uptake in a mouse model of ovalbumin (OVA)-induced allergic airway inflammation.

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Respiratory Research,
2020, 21 (1), 168.

OPEN ACCESS
Optical characterization of sputtered aluminum nitride thin films – correlating refractive index with degree of c-axis orientation

Ababneh, A. | Albataineh, Z. | Dagamseh, A. M. K. | Al-kofahi, I. S. | Schäfer, Bruno | Zengerle, T. | Bauer, K. | Seidel, H.

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Aluminum Nitride (AlN) is a well-known compound piezoelectric material with high Complementary Metal-Oxide Semiconductor process compatibility. Previous results show that the piezoelectric coefficient correlates with the c-axis orientation of AlN. In this work, the optical properties of reactively sputtered AlN thin-films have been investigated to find a relation with the structural properties of the film (i.e. c-axis orientation) using spectroscopic ellipsometry. The results show that for almost the same film thickness, highly c-axis orientated films have higher refractive indices compared to films with low c-axis orientation or amorphous layers. A relationship between (002) peak intensity measured with x-ray diffractometry and refractive index is shown. At 546 nm wavelength, the refractive index decreased from 2.15 for films with high (002) peak intensity, to 2.11 for films with about half the peak intensity, and further down to 1.90 for films without preferred orientation. Additionally, with the same sputtering conditions, the variation of the film thickness seems to have no significant effect on the refractive index. The results of AlN thin-film mass density obtained from x-ray reflectivity measurements are consistent with refractive index measurements. The mass density of AlN thin-films with high c-axis orientation that resulted in a higher refractive index is 2.99 g/cm−3, compared to 3.23 g/cm−3 for epitaxial grown AlN layers. This value decreased to 2.82 g/cm−3 for films with poor c-axis orientation.

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Thin Solid Films,
2020, 693, 137701.

Selective sensing of sulfate anions in water with cyclopeptide-decorated gold nanoparticles

Bartl, Julia | Reinke, Lena | Koch, Marcus | Kubik, Stefan

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The interaction of cyclopeptides bound to the surface of mixed monolayer-protected gold nanoparticles with sulfate anions causes the crosslinking and concomitant precipitation of the nanoparticles from aqueous solutions even in presence of an excess of competing anions, thus allowing the naked eye detection of sulfate in water.

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Chemical Communications,
2020, 56 (72), 10457-10460.